rs249692441 SNP Detail

Summary

• ID
  rs249692441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttttcaaTT TTTAGAGAGG AAGAAGAggg
  ctagggattt ggctcagtgg taaagtgttg cctagcactg agagactagg ttcaggttca
  gtcgccagca atacaaacaa GCCACTCTCA GAACTCTGAA AGGATGAGAT ACCGGCCTTT
  Y
  TAAACCCTTG GCTTTTGCTC CCCGCAGGCT TCTGCAAAGA GAGTCCCAGC CTTGCCAGGA
  GGCGGAAGTG ACTGAGCTGC TAGATCCTTC AAAGTGGAGA CATCCAGAAG ACAGACAACT
  TGGCCAGCGG GAAATGAAGG TGAAGAGAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322940978	CHEV_9_44285550	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249692441					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388764 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	973 bp proximal
Cpgi21660	CpG island 21660	1689 bp proximal
Gm10023	predicted gene 10023	457 bp downstream
Gm22540	predicted gene, 22540	952 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	1164 bp distal
Rr203857	regulatory region 203857	1198 bp distal
Rr206312	regulatory region 206312	36 bp proximal
Rr209143	regulatory region 209143	364 bp distal