rs249702141 SNP Detail

Summary

• ID
  rs249702141
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60235412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCACACAC TTCTGCAGCC
  AGATAAGGGA CATTTTCCGA GAATCCAGGA AAAACAGGGC CTAGGGACCC TGCAGAGGAG
  GTCTTGCGGG TTTCAGGGCC CACCACCCCG TGTCTCTCTG CTTACAGACC CTCTCCCTGG
  TAACCTGATG GCTGGCAGGC ACTGAATAGT CGACCATACC ATTCAAATTC CCAAGGGGGG
  K
  GGTGATGGGA GCCCCAGGCC AAGAGGCAGT TAAACCTGCC CCTGCCCTGA CCAGTGTTTC
  CGCACATGAG AGGGTTCCAA GGCGACAGGC TGGAGTGAGC CAGGCGAAGG CCTCTCTCTC
  TTTCTTTCCC ACTCAGTTGC TACTTCTACA CTCCCACTTG TCCCCTCCCC AAGACAGGCC
  AGGACTCTCC CAACAAAACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325374	CHEV_10_59862381	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249702141					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60235412 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	231 bp upstream
Rr215449	regulatory region 215449	1212 bp distal
Rr223077	regulatory region 223077	782 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	116 bp upstream
Tssr93634	transcription start site region 93634	169 bp upstream
Tssr93635	transcription start site region 93635	216 bp upstream
Tssr93636	transcription start site region 93636	1120 bp upstream