rs249702784 SNP Detail

Summary

• ID
  rs249702784
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73358698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTTTCT CTGCTGGCTG
  TCTTGGAACT CACCCTGTAG ACAAGGCTGG GCTTGCCACC TGGCTCTTAG TAGGTTTTTT
  TTTTTTTTTC CTTTCTCGGT GTACAGTAGA AGTAGGTCAG GGTCAGTGGC AGAGGACAAC
  TTGAGGGAGT TGGTTCTCTG ATCATGTTGT AGGTTCAGGA CATTAAACTC AGGTTATCAG
  K
  TAGGTGGCAA TTGTTTTTTT TCCCACTGAG CCATCACCCC AGCCTGGCAT GGGTTGATTT
  GGCATGGCCA GCCCAAGGCT CACCAGGAGG GATAAGGAAG AGAAAAAGGC TCCTAAGAGG
  AAGACCCCAG CAGTGAGATG CAAGATGGTA AAGCTAGAGG CCGGGGAACA GAGCCCTGTG
  TGAATAGCAG GCTCGGAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394552212	MGP_WTSI_15_73317279	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249702784					SNP	G	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	G	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394552212	MGP_WTSI_15_73317279	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73358698 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	within coordinates
Rr504083	regulatory region 504083	351 bp distal
Tssr4621	transcription start site region 4621	973 bp upstream
Tssr4622	transcription start site region 4622	1035 bp upstream
Tssr131529	transcription start site region 131529	985 bp upstream
Tssr134702	transcription start site region 134702	419 bp downstream
Tssr134703	transcription start site region 134703	459 bp downstream
Tssr134704	transcription start site region 134704	474 bp downstream
Tssr134705	transcription start site region 134705	486 bp downstream