rs249703157 SNP Detail

Summary

• ID
  rs249703157
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66370182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCACCAT CACCCTCTTT
  CTAGTTTCTC CTTTTTTAAT TAAACCAAAA TGGAGGAATG TTAGCATTTC TTCTAGGCTC
  TGCCTAACAG TTACCTAGCA ATAGTCAGGC ATGACCCTGA CTTGCTATAA AAGGACTTTT
  TGGCTTCTCT GGCCTCTCTC CCCCTGCCCC CTGCCCCCGC CCCCCACTGA CCCCCCCCCC
  M
  ACACACACCA ATTAGTGTCA CTTCCTATCC AGAGGTGTTA GGCCTTTCGA AATTTAGAAA
  ACTTGGACTA TCCAGAGAAT AAATGTTGGA GGAAGAAGAA GAGGAGGAAG AGAAGGAGTG
  GGAGGAGGAG GAGGAAGAGG AGGAATAGCT TAGAGATAAA GATTTGAAGT CATTTTGTAC
  CTGAGGGAAC CAGAATTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss365272585	MGP_WTSI_5_66604078	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs249703157					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365272585	MGP_WTSI_5_66604078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66370182 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	1908 bp upstream
Gm73278	predicted gene, 73278	1787 bp upstream
Gm73415	predicted gene, 73415	1369 bp downstream
Rr378070	regulatory region 378070	1024 bp upstream
Tssr51198	transcription start site region 51198	1705 bp downstream