rs249708101 SNP Detail

Summary

• ID
  rs249708101
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194699094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTTTAG CCTATGGCTA
  GGAGAAGCCC ATATGGCTCA AGAAAAGATG ATGCAATATT TAGTTAAGGA CAGCCCTGGT
  TGATTTGAGC CCTGGGAGCT GCCATTCAAA GAGTTAAAGC TAGTCTTATT CCCATGAATC
  TCAAAGTGAA GAAGAAAGGC TGCAGAAATA GGGACCTGTG TGTTACGGAG CTGTTAGGTA
  W
  GAAAAAGAAA GAAAGAAAGG AAAAAAAAAA AAACCAGGCT AAAATGTGTG GCCAAGAAAA
  CAGAATGTAG GTCCAACTTT TTTTTTTCCT TGTTTGACCA GCCTTGGCAC TGCCCTCTGC
  CTCTCCAGAG GGAAAGCTGC AGTTCTGCTT CTGCAACACA AGGAGCAGAC TGGAGAATTT
  AGATCTGCGT CACAGCGCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352898602	MGP_WTSI_1_196842980	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249708101					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352898602	MGP_WTSI_1_196842980	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194699094 () rs orientation: forward

Symbol	Name	Function Class
9630010A21Rik	RIKEN cDNA 9630010A21 gene	338 bp downstream
A330023F24Rik	RIKEN cDNA A330023F24 gene	613 bp upstream
Gm37027	predicted gene, 37027	783 bp downstream
Rr426747	regulatory region 426747	1945 bp distal
Rr426748	regulatory region 426748	within coordinates
Rr426749	regulatory region 426749	647 bp proximal
Rr426750	regulatory region 426750	1521 bp proximal
Rr426751	regulatory region 426751	1614 bp proximal
Tssr10859	transcription start site region 10859	364 bp upstream
Tssr10860	transcription start site region 10860	630 bp upstream
Tssr10861	transcription start site region 10861	1809 bp upstream
Tssr15868	transcription start site region 15868	1454 bp downstream