rs249716404 SNP Detail

Summary

• ID
  rs249716404
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126363252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACATTTTC TTAAGTCTCC TAATGTCTGT CCTGAAGAGC
  TTTCTTCAGT GGCTCCTCTT GTTTTGTTCA CTGTAGTGAC CTGAATTTTA TATTCTACTC
  A
  CCCCTTGCCT CTTCACAGCT TCATCCACTT TTAATGCCCA AATATCTATA CGTTACCATG
  TTGCAGCTTC ATATTTCCTA CTGTCTGCTG GACAGCTCC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321300077	CHEV_4_126146703	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249716404					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126363252 () rs orientation: forward

Symbol	Name	Function Class
Ago1	argonaute RISC catalytic subunit 1	876 bp upstream
Cpgi14821	CpG island 14821	294 bp distal
Rr398490	regulatory region 398490	624 bp downstream
Rr599695	regulatory region 599695	1049 bp distal
Rr599696	regulatory region 599696	1340 bp distal
Rr599697	regulatory region 599697	386 bp distal
Rr599698	regulatory region 599698	699 bp distal
Tssr43383	transcription start site region 43383	806 bp upstream
Tssr43384	transcription start site region 43384	754 bp upstream