rs249722216 SNP Detail

Summary

• ID
  rs249722216
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82720484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGAATA AACATCTCTA
  CACAGCACAC GCTGGGCTCA GGCGGGGGTG CTCTGCACGG AGAAATCGTA CTTGTACTAA
  GTTTTTCACC CTTCCATAAA GCCCAAGCCT GTAACCCCAG CACTTGCAGG GGTGAGGTGA
  TCAAGAAGAA TTTAATCAAG AAACGTGCAA GGCCTAAGCT ATGTGAGACA CAAACACACA
  M
  AGAGGCACCA CAAACAAGCA CAGGTCAGTG CTAGGTATAA GCATTATTGG GCAAAGGACT
  GGTAAGAATC AAATGGCTCT CTCACAATAG CTTCCAAAGC CTCCATGCCT ACACATGCCT
  GTGTCTTTAG GGCAGTTAAG CTTGGCAGCT TCTTTTTCTA CCAAGCTAGA GAATTCAATA
  CAAAGAATCG GAGCCTTAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384059541	MGP_WTSI_11_82643160	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249722216					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384059541	MGP_WTSI_11_82643160	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82720484 () rs orientation: forward

Symbol	Name	Function Class
29.MMHAP71FLB5.seq	DNA segment, 29.MMHAP71FLB5.seq	1363 bp proximal
D11Pas73	DNA segment, Chr 11, Pasteur Institute 73	468 bp distal
Gm72007	predicted gene, 72007	within coordinates
Rffl	ring finger and FYVE like domain containing protein	within coordinates
Rr386369	regulatory region 386369	339 bp downstream
Rr452822	regulatory region 452822	1709 bp proximal
Tssr103583	transcription start site region 103583	1892 bp downstream
Tssr103584	transcription start site region 103584	490 bp downstream
Tssr109581	transcription start site region 109581	616 bp upstream