rs249727504 SNP Detail

Summary

• ID
  rs249727504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43484057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGT TCCTCAGAAA CAGAAAAGAA
  R
  ATGGAGCAGG AGAGAAATGG GTTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325162103	CHEV_16_43663807	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249727504					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43484057 () rs orientation: forward

Symbol	Name	Function Class
Rr404824	regulatory region 404824	1902 bp downstream
Rr516192	regulatory region 516192	442 bp proximal
Tigit	T cell immunoreceptor with Ig and ITIM domains	within coordinates
Tssr138525	transcription start site region 138525	836 bp upstream
Tssr141140	transcription start site region 141140	463 bp upstream
Tssr141141	transcription start site region 141141	410 bp downstream
Tssr141142	transcription start site region 141142	438 bp downstream
Tssr141143	transcription start site region 141143	451 bp downstream
Tssr141144	transcription start site region 141144	666 bp downstream
Tssr141145	transcription start site region 141145	1305 bp downstream