rs249728157 SNP Detail

Summary

• ID
  rs249728157
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGAGCTC TCGGTTCTTC
  CGCGTTCGCA GCCAATGCCT GTAGGGTGGG AGGAGCGGGC GAGAGCCCAG CTGGGGTGGC
  AAATTGAGTA CAGTGTGCGC TGGGCGCCCA GGGGGCCTGA GTGTGCAATT GTGCCCGCCT
  TATTCCAATT CCCAGAGCTG GCAGGACCCC TGCCCCGGGG GTGTGCCCGG AGCTAGCTAT
  M
  CCCGCCCCCA GGACTTCCAG CAGCCCCACT CTCTCCGCAC AGCAGACGGG AAGTCACAGG
  TCGCTAGCGT TAGGGAAGAC AGCGACCGTG GCAGAAGGGA AAAGAAGCGC GCTTTTGGGA
  AGTCACATTT GTAGTGTTCC TTCTTTTAAG ATAAAGGAAA GCTATTTGGG GAGGGGGGGG
  GAACCTACCC ACATACACGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385325243	MGP_WTSI_12_25781281	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249728157					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385325243	MGP_WTSI_12_25781281	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Cpgi4501	CpG island 4501	1915 bp proximal
Gm59395	predicted gene, 59395	44 bp upstream
Id2	inhibitor of DNA binding 2	324 bp upstream
Rr403250	regulatory region 403250	53 bp downstream
Tssr112979	transcription start site region 112979	677 bp downstream
Tssr112980	transcription start site region 112980	21 bp upstream
Tssr112981	transcription start site region 112981	36 bp upstream
Tssr112982	transcription start site region 112982	1012 bp upstream
Tssr115883	transcription start site region 115883	1886 bp upstream
Tssr115884	transcription start site region 115884	623 bp upstream
Tssr115885	transcription start site region 115885	320 bp upstream
Tssr115886	transcription start site region 115886	823 bp downstream