rs249735975 SNP Detail

Summary

• ID
  rs249735975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:53337738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACAAAA AGATGACCTG
  AAAATACAAA ATGGGCTAGA CTGCCACGGG AAGGGGAGTG GAGAGAGCAG GAGAGGGGAT
  ACACTAGAAA CATGGTATAG GCATATATTG AAACATCGCA GTGAAACTGC TAACTTGAAC
  AATTATATAT TTAGCTCCTG GCTCTCACTC TGCTTACATT TTACATATAT GTAATTTTTT
  Y
  TTTTTTTAAA GAATTTTGAA ATAGGGTATT GCTATTCGGC TAGGCTGACC TCAGATTTTG
  GCAATCCTCT TGAATGCTGG GATTACAGAA CTGAACCAAC ACACCTGGAT CCAGTTTGAG
  CTTTCTTTCC TATTATTCCA TCTAGTTAAA TTGACAGGCT AGAAAACAAG CTTTGGAAAA
  AGAAGCCATA CAAATAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349656170	MGP_WTSI_1_53355423	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249735975					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349656170	MGP_WTSI_1_53355423	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53337738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	1134 bp distal
Gm28778	predicted gene 28778	Intron
Ormdl1	ORM1-like 1 (S. cerevisiae)	Intron
Pms1	PMS1 homolog 1, mismatch repair system component	1561 bp upstream
Rr410945	regulatory region 410945	1572 bp distal
Rr410946	regulatory region 410946	1809 bp distal
Rr410947	regulatory region 410947	1458 bp distal
Rr410948	regulatory region 410948	700 bp distal
Tssr6687	transcription start site region 6687	1485 bp downstream
Tssr6688	transcription start site region 6688	1455 bp downstream
Tssr6689	transcription start site region 6689	1423 bp downstream
Tssr11646	transcription start site region 11646	1582 bp upstream
Tssr11647	transcription start site region 11647	1556 bp upstream