rs249740559 SNP Detail

Summary

• ID
  rs249740559
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127126567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCCGCC CCCCCATCCC
  CTCCCTCGCC GCGCTCTCCT CCGCGCGCGC GCATGACTCA CTCACCTCCT CCGCGAAGCC
  GCGTGACCCA AAGCCACTTC CGGGTCCGAG ACAACGTAGA CTCTCAAGCC AGAGGGCGCG
  ATGGGGGTGG GGCCGTGAGA CTCCTGAGTG GCGGATGTAA GGGATGAGGC GGAGCCAGTG
  M
  CAGCGTGCCG CTTTCTGATT GGTAGGCTCC TGGACCCTGC CCCCCCCCCA GGAGGGGCCG
  GACAGCATAA AGGATACTCG CTCTCCGCTC TTGAGGTCAG TTATCTTGAG CCTAACACGT
  CGATTATATC ATGTTGAAGA TGAGCGGGTG GCAGCGACAG AGCCAGAATA ACAGCCGGAA
  CCTGAGGAGA GAGGCGAGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182459	MGP_WTSI_10_126727754	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249740559					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182459	MGP_WTSI_10_126727754	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127126567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	1115 bp distal
Cpgi2350	CpG island 2350	within coordinates
Ddit3	DNA-damage inducible transcript 3	95 bp upstream
Gm4189	predicted gene 4189	within coordinates
Gm20492	predicted gene 20492	859 bp downstream
Gm66222	predicted gene, 66222	185 bp downstream
Mbd6	methyl-CpG binding domain protein 6	1680 bp upstream
Rr369092	regulatory region 369092	within coordinates
Rr402323	regulatory region 402323	1311 bp downstream
Rr402324	regulatory region 402324	634 bp upstream
Rr440864	regulatory region 440864	1819 bp distal
Rr440865	regulatory region 440865	1532 bp distal
Rr440866	regulatory region 440866	679 bp distal
Rr440867	regulatory region 440867	within coordinates
Rr440868	regulatory region 440868	58 bp distal
Rr440869	regulatory region 440869	640 bp proximal
Tssr3392	transcription start site region 3392	1747 bp downstream
Tssr96179	transcription start site region 96179	684 bp downstream
Tssr96180	transcription start site region 96180	88 bp upstream
Tssr99758	transcription start site region 99758	1924 bp upstream
Tssr99759	transcription start site region 99759	1852 bp upstream
Tssr99760	transcription start site region 99760	1780 bp upstream
Tssr99761	transcription start site region 99761	1701 bp upstream
Tssr99762	transcription start site region 99762	1663 bp upstream
Tssr99763	transcription start site region 99763	1631 bp upstream
Tssr99764	transcription start site region 99764	338 bp upstream