rs249747620 SNP Detail

Summary

• ID
  rs249747620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121068385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGACGTT CATGCGTACT
  GGGAATGGAG CCATAGCACC ATGCCTGCAC AACACACACT TTTGCACACT GGGCTATCTC
  ACTGTCCACC CCCCCCCCAA GACATCTCAT TCCCCCCCAC TAAGCTATCT CACTGCCCCC
  CTTACTGAGT TATCTATCTC ACTGTTTCCC CCACTGAGCT ATCTCACTGT CCCCACTGAG
  W
  CATCTCACTA TCCCCACTGA GTCATCTCAC TGCCCCCCAC TCAGCTATCT TAATGTCCCC
  CCACTGAGCT ATCTCATTGT CCCCCCACTT GGCATTTATA ATTGGACCAA GTTTTAGGCA
  TCCCCAGAAG TTTTATTACA CTGATTATTT CAGTGCAAAT CAGGACAAAG TATTGACACC
  TCTCAGGTTG TTTAATTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324851444	CHEV_14_121230195	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249747620					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121068385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	949 bp proximal
Rr287002	regulatory region 287002	1385 bp distal
Rr287003	regulatory region 287003	616 bp proximal
Rr390218	regulatory region 390218	1089 bp upstream
Rr404289	regulatory region 404289	827 bp upstream