rs249750684 SNP Detail

Summary

• ID
  rs249750684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117581095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATCTGC AAAGACAAAG
  AGGCAAATGC TGTGAGATTA AATTCAAGAA TGATGTCTTA CAACACTAAG GAAACATAAC
  AGTGGGGCTG GGGTGGGGGA GCACTGTAAG TTTTCTTTGG GGAAAACTGC CAATCCTTCT
  CTACAGAGAT TCACATACAA CTCTACATCT GGAAGAAAAT ATGAATCCGT GCGTTGTGCT
  Y
  TGTAAGGAAA CAGGACACAC ATTTACAGGG AATAAAATAA TCCCCCAAAC CAGTACTTAA
  CACATAAGCA TAAACAAGGA AGGAGGAAAG CATTATGACT GGAAAAACGA AAAAACCACT
  AAGTGCTAAT GTTATTTTAA CGAATCTCCT TTTATGTAAA CACAAGGCAC CCCAGCAGTG
  TGCCACTGAA GGTGTATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499173	CHEV_10_117182246	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249750684					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117581095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	403 bp proximal
Cpgi2239	CpG island 2239	1106 bp proximal
Gm66856	predicted gene, 66856	1291 bp upstream
Rr439608	regulatory region 439608	733 bp distal
Rr439609	regulatory region 439609	1346 bp distal
Rr439610	regulatory region 439610	752 bp proximal
Rr439611	regulatory region 439611	1165 bp proximal
Rr439612	regulatory region 439612	1302 bp proximal
Slc35e3	solute carrier family 35, member E3	within coordinates
Tssr99471	transcription start site region 99471	1141 bp downstream
Tssr99472	transcription start site region 99472	1166 bp downstream