rs249750889 SNP Detail

Summary

• ID
  rs249750889
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162534697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tactagagg gcttagggca gtcagaaacg
  tggagatgct gttataaatg atggggtaaa ctttcagtca cacaatatga agctctgtat
  ctgtaactgc agatagtaat atggacttgt atactgaagt tCTAATACAC CAATTAGTTA
  S
  TATAACTAAT ATACTAGAGC AAGTCTATCA ATTTGCCAAT CACAAATAAC TATACAACAT
  AATCACTAAA ATACATCCCC ATAAAAGAAA CACTAGCCAT CTGGCTATCG ATGAGAGTTT
  ACACCACTGC CCATTATAAA CTATCACTTT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320083509	CHEV_1_164637259	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249750889					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162534697 () rs orientation: forward

Symbol	Name	Function Class
Prrc2c	proline-rich coiled-coil 2C	within coordinates
Tssr14640	transcription start site region 14640	1564 bp upstream
Tssr14641	transcription start site region 14641	983 bp upstream
Tssr14642	transcription start site region 14642	937 bp upstream
Tssr14643	transcription start site region 14643	700 bp downstream