rs249754102 SNP Detail

Summary

• ID
  rs249754102
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75061357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGACCCC CGCCCACGCT
  ATAGGGGGGG TCCCCCCAAA CCGCCCACAG CTTCTTATTG GCTGCGCCAT CCTCCGTGGC
  CAAGCCGGAG AGGCTGGGGC TCAGAGTTAC TATGGTAACC AATGAGGTTC CCGGGATCTC
  ATCTCTCAGA GGCCTTGGAG AGCTTAGCAA CCGCGCGGGG CGCAGGGCGG GTGGGGGCTA
  M
  GCTCGCCGCA CCCCACGCTG TCTTCGAGCC CCCACTCCCC CGCTTGAGGT AGTGGCTGAG
  TCACTCGCCC GGGGCAGCCG GCCGGGCCTC TAGCTGTACC AGTGAGACAC CAAGGTCTTG
  GGCGCCTCCT AGAGGCTGCG TTTCTTTGGC AGGAGACTTC TATGCCTGGC CTAGGCTTCT
  GGTCCAAAGA GTCTTCAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383893994	MGP_WTSI_11_74984033	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249754102					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383893994	MGP_WTSI_11_74984033	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75061357 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	1477 bp upstream
Cpgi3251	CpG island 3251	1118 bp distal
Cpgi3252	CpG island 3252	within coordinates
Cpgi3253	CpG island 3253	802 bp proximal
Cpgi3254	CpG island 3254	1545 bp proximal
Hic1	hypermethylated in cancer 1	1012 bp upstream
Rr451073	regulatory region 451073	1880 bp distal
Rr451074	regulatory region 451074	1299 bp distal
Rr451075	regulatory region 451075	1257 bp distal
Rr451076	regulatory region 451076	522 bp distal
Rr451077	regulatory region 451077	119 bp proximal
Rr451078	regulatory region 451078	1454 bp proximal
Tssr102928	transcription start site region 102928	1913 bp upstream
Tssr102929	transcription start site region 102929	1940 bp upstream
Tssr109160	transcription start site region 109160	1380 bp upstream
Tssr109161	transcription start site region 109161	1355 bp upstream