rs249756957 SNP Detail

Summary

• ID
  rs249756957
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3335043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAACATAT AGGATCTAGC
  TTCTACGTTT CCATTATTCA CCACCTATTG AACATTTAAA CAGAACAAAC ACTGTTGCTT
  GTGGTCAAAG ATTGTTGAAG TTTTTACAGG AAAAGCGTGC TGTGGTTTCT ATCACAAGTA
  GATGAACTAG ATTAAGTTCG GTCGAGTTTT GACTGTGCCA TATAAGACGT CCTTTACTAT
  W
  ACCCGCAGTC ATGTAGCGCT AAAGACAAAT CGCGATGGTA GAATTGAAAT ACTAAAGGTT
  CACATAAAAT CCTGGCTCGT GGAAGACTGA GACAGGAGGC TGCAGACTGG GCCTTCGGGG
  CCAGAACTTG CACACACCAT AACAGAAAAA TAAATAAATA AATAAATAAA TAAATAAATA
  AAAATAAAAA AAGGCAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352905781	MGP_WTSI_2_3251278	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249756957					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352905781	MGP_WTSI_2_3251278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3335043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11150	CpG island 11150	1103 bp distal
Rpp38	ribonuclease P/MRP 38 subunit	1363 bp upstream
Rr396749	regulatory region 396749	1170 bp downstream
Rr550889	regulatory region 550889	1374 bp distal
Rr550890	regulatory region 550890	873 bp distal
Rr550891	regulatory region 550891	1672 bp proximal
Tssr15888	transcription start site region 15888	843 bp downstream
Tssr22355	transcription start site region 22355	1565 bp upstream
Tssr22356	transcription start site region 22356	1546 bp upstream
Tssr22357	transcription start site region 22357	1356 bp upstream
Tssr22358	transcription start site region 22358	1976 bp downstream