rs249761058 SNP Detail

Summary

• ID
  rs249761058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4033576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCGGCCCA GGAGCTCCCT CAGGCACCTC
  TCAGCCAGTT CTGCTGGGTT CTCCTTTTCC TTCTCTGGTG CTTGGAGGGG CGAGGGAGAC
  CGGCTGTGAA TACAGAGCCA AGTGGATAAA GGATGGGGTT CAAAGCTGGG AGCTAGGACT
  R
  TATAGCCCTA GGTTTCTGCT CAGAACAAGC AGGAATTGGA AATAAGCTGC AGCAGGTCAT
  AGAGTAGTCT TGACTGCCAG CGATTAACCA GGGTACGGGA TCTGGCAGTA GAAGATTGGA
  GGAGACAACA GAGTTGTTTG TGGAGAAACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873069	CHEV_12_3983576	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249761058					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4033576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4371	CpG island 4371	1305 bp distal
Efr3b	EFR3 homolog B	within coordinates
Gm48001	predicted gene, 48001	1089 bp upstream
Gm59670	predicted gene, 59670	887 bp downstream
Rr256319	regulatory region 256319	25 bp proximal
Rr265366	regulatory region 265366	1175 bp distal
Rr267337	regulatory region 267337	within coordinates
Rr369491	regulatory region 369491	1003 bp downstream
Rr403219	regulatory region 403219	1910 bp downstream