rs249771087 SNP Detail

Summary

• ID
  rs249771087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30206690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACACCTG TCACAAAAGC
  CTTCCAAACT GGGAAGCCCC AAACAGTTAC TGTCAGTCGA CAAATGCTAC TCCTTCCTCC
  ACTCCCAACT CCACACCCCA CCAGAAAAGC GATCAATCAG GCCCACAGTC TGTGTGAAGG
  CGAGGCCAGA GAGTACGTAG CGAAAAAAGG GTCTGGGCTT TTCTAGTCCT CACGGCCCTG
  Y
  GTCTCTCCCT TTAATCTGGA GTGTTGACAC CTCAAGTCCG CTTTCCTTTC TGGACTTCGG
  TTATCGGTGT AGAGTGTGCT GATAGTAGGG TGATTTACTC GTCGGTGGCT GGGGCCGAAC
  TAGGCTTCGG ACAGTCAGCA CCGGCACGGA CCCATCTGGG GCCCTTCCCA CATTCTTGCT
  CCGGGCACAT CACCTTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395814121	MGP_WTSI_16_30387958	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249771087					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395814121	MGP_WTSI_16_30387958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30206690 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	within coordinates
Cpgi8159	CpG island 8159	within coordinates
Gm61087	predicted gene, 61087	971 bp upstream
Gm61089	predicted gene, 61089	1113 bp downstream
Rr370076	regulatory region 370076	1431 bp upstream
Rr514223	regulatory region 514223	within coordinates
Rr514224	regulatory region 514224	648 bp proximal
Rr514225	regulatory region 514225	1005 bp proximal
Rr514226	regulatory region 514226	1018 bp proximal
Rr514227	regulatory region 514227	1826 bp proximal
Tssr140714	transcription start site region 140714	818 bp downstream
Tssr140715	transcription start site region 140715	896 bp downstream
Tssr140716	transcription start site region 140716	934 bp downstream
Tssr140717	transcription start site region 140717	1440 bp downstream