rs249775888 SNP Detail

Summary

• ID
  rs249775888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66211070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCGCAA GTCCTTGCTC
  AACAGTTTAG AGGAAGCCAA GAAGAAGAAA GAGGTAGGGC CAAGCCTTGG CTGAGCCCAG
  GCTCTCCCTG CTGGAGGGGA GGAGGGGACA TGGTGAGCAG GTGCCTTTCT GGGTTGCCAT
  GGTGTCCTAA GGCGGTCCTC GAAGGGTTCC GCTAATGCTG GACTGAGGAG CCAGGGAAAG
  Y
  ACATTCGCTT GTGGGAGCCT CAGTGCCGAG GCCTTGAATT TGGTTTCCCT GCAACTCTGG
  TCCAGGGCCT GAAGCCTAGA TTCATTTCAA TAGGTTTTTC TAACCCTTGC TGTGGGTAGG
  GCATGGTGCA GGACTCAGCG GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGATA
  TGAGCATCCA GACATTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367378	MGP_WTSI_14_66592458	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249775888					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367378	MGP_WTSI_14_66592458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66211070 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126260	transcription start site region 126260	1830 bp downstream
Tssr126261	transcription start site region 126261	1813 bp downstream
Tssr126262	transcription start site region 126262	1786 bp downstream
Tssr126263	transcription start site region 126263	294 bp downstream
Tssr126264	transcription start site region 126264	253 bp downstream
Tssr126265	transcription start site region 126265	225 bp downstream
Tssr126266	transcription start site region 126266	186 bp downstream
Tssr126267	transcription start site region 126267	632 bp upstream
Tssr126268	transcription start site region 126268	1216 bp upstream
Tssr126269	transcription start site region 126269	1302 bp upstream
Tssr126270	transcription start site region 126270	1961 bp upstream
Tssr126271	transcription start site region 126271	1979 bp upstream
Tssr129260	transcription start site region 129260	262 bp upstream
Tssr129261	transcription start site region 129261	223 bp upstream
Tssr129262	transcription start site region 129262	210 bp upstream
Tssr129263	transcription start site region 129263	194 bp upstream
Tssr129264	transcription start site region 129264	141 bp upstream
Tssr129265	transcription start site region 129265	1240 bp downstream
Tssr129266	transcription start site region 129266	1275 bp downstream
Tssr129267	transcription start site region 129267	1307 bp downstream
Tssr129268	transcription start site region 129268	1369 bp downstream