rs249777820 SNP Detail

Summary

• ID
  rs249777820
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81017552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACGGTGT CCTGAACAGG
  AAGCGTGGCC ATGTGTTTGA GGAGTCCCAG GTGGCTGGTA CCCCCATGTT TGTGGTCAAG
  GCATACCTGC CTGTCAATGA GTCCTTTGGT GAGTGTCTGG TCCCTGGGGT TTGCAGATAA
  CCTGCAAGGC CTGTGTAATA TAGCTGCGGG GTGCAGAACA GAAGCAGATT TCTGTCATCA
  M
  GGCCAGCTTG CTTAAGGGTG CCAGGAAAGA CAGAGCTACA AACTACACAG AGAAACCAAA
  ACAAAGGACC CAGGAATCCC TCCTGGGAGG GGTGGCAAGA CAGCTAAGCA TGTCCCCCCC
  CCACCCCACC CCCCCAGGGA AGTCACCTGA GTCTCCTGTC TTCTGTCTAG GCTTCACCGC
  TGATCTGCGA TCCAACACCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381032094	MGP_WTSI_10_80644463	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249777820					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381032094	MGP_WTSI_10_80644463	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81017552 () rs orientation: forward

Symbol	Name	Function Class
4930442H23Rik	RIKEN cDNA 4930442H23 gene	887 bp downstream
Cpgi1951	CpG island 1951	829 bp proximal
Dapk3	death-associated protein kinase 3	1287 bp upstream
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435546	regulatory region 435546	1530 bp distal
Rr435547	regulatory region 435547	797 bp proximal
Rr435548	regulatory region 435548	1710 bp proximal
Tssr3283	transcription start site region 3283	709 bp upstream
Tssr94705	transcription start site region 94705	1979 bp downstream
Tssr94706	transcription start site region 94706	1811 bp downstream
Tssr94707	transcription start site region 94707	1756 bp downstream
Tssr94708	transcription start site region 94708	1700 bp downstream
Tssr94709	transcription start site region 94709	1442 bp downstream
Tssr94710	transcription start site region 94710	682 bp upstream
Tssr94711	transcription start site region 94711	1282 bp upstream
Tssr94712	transcription start site region 94712	1338 bp upstream
Tssr94713	transcription start site region 94713	1504 bp upstream
Tssr94714	transcription start site region 94714	1566 bp upstream
Tssr98571	transcription start site region 98571	1939 bp upstream