rs249806261 SNP Detail

Summary

• ID
  rs249806261
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69276157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGGGCGT ATATTTAAGA TCTTTCTGAA
  AAGGAAAACA GTAAAAAGAA TGCATGTGTA TATTTGCTTG ATTTTGCATT TCAAAACTTT
  TGAAAAGTTA AACTAGACAA CAAAGAGAGA TCCCAGCtgt ggtggtttga ataaaaatgt
  M
  tcccgtaggc tctggtgtgt aaacacttgg ttcccagttg gtggcgctgt ttggagagat
  tcaggtggtg cagttgtgct ggagcagctg tggtggcttg aatatgctta gcccaggaag
  gggcactatt aggaggtgtg gccttgttgg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324083403	CHEV_12_70330370	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249806261					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69276157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	1097 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	1188 bp upstream
Rr403319	regulatory region 403319	1069 bp downstream
Rr467012	regulatory region 467012	1447 bp distal
Rr467013	regulatory region 467013	740 bp distal
Rr467014	regulatory region 467014	1171 bp distal
Rr467015	regulatory region 467015	within coordinates
Rr467016	regulatory region 467016	30 bp proximal
Tssr113624	transcription start site region 113624	742 bp downstream
Tssr116494	transcription start site region 116494	1199 bp upstream