rs249830457 SNP Detail

Summary

• ID
  rs249830457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74536446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCCCT GCGGCGGGAT
  TGCCTGTCAC GGGGAGCCCG CGAAGTTTTA CGGATACGAT AACTTACAGA GACAGCCGAT
  TTTTACGACC CAGCAAGAGG CCGAGCTGGT ACAATATCCT GACTGTAAAT CGTCCAGTGG
  TAATATTGGC GAGGACCCAG ACCACTTAAA TCAGAGCTCG TCTCCTTCTC AAATGTTTCC
  Y
  TGGATGAGAC CACAAGGTTG GGATGCGCTA TTTTTTTTTT TTTTTTTTTT TTTTTAAGGA
  GGGGAGAAAG GGAGAAATCT GCTTTCATCT CACGTTCTAG CTTTAAAACT CCCCTGTCCT
  TTCCCTCTCC CCTTCCTTTT CCTTCTGGTG TAGCCAATGT GGCTCTTGTA CAAAAACTAA
  TACAGACTTT TTAAAAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485027	MGP_WTSI_2_74544159	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249830457					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485027	MGP_WTSI_2_74544159	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74536446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	within coordinates
Gm38462	predicted gene, 38462	within coordinates
Hoxd8	homeobox D8	Coding-Synonymous
Igs15	intergenic site 15	within coordinates
Rr559363	regulatory region 559363	1853 bp distal
Rr559364	regulatory region 559364	1477 bp distal
Rr559365	regulatory region 559365	1356 bp distal
Rr559366	regulatory region 559366	1351 bp distal
Rr559367	regulatory region 559367	940 bp distal
Rr559368	regulatory region 559368	259 bp proximal
Rr559369	regulatory region 559369	1546 bp proximal
Tssr18420	transcription start site region 18420	1557 bp downstream
Tssr18421	transcription start site region 18421	1454 bp downstream
Tssr18422	transcription start site region 18422	1265 bp downstream
Tssr18423	transcription start site region 18423	1188 bp downstream
Tssr18424	transcription start site region 18424	1173 bp downstream
Tssr18425	transcription start site region 18425	1024 bp downstream
Tssr18426	transcription start site region 18426	1001 bp downstream
Tssr18427	transcription start site region 18427	946 bp downstream
Tssr18428	transcription start site region 18428	913 bp downstream
Tssr18429	transcription start site region 18429	724 bp downstream
Tssr18430	transcription start site region 18430	333 bp downstream
Tssr24623	transcription start site region 24623	269 bp upstream