rs249834231 SNP Detail

Summary

• ID
  rs249834231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80711186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAAAAT AATCACTGCC
  TCAAGGAAGT AGGTTACCTC ATTACACCGA GCCTGCTTGG GTATCTGGAT TGTAACGAAT
  ACATTAAAAA TTAAAGTTTG TGAGAAGGGG CTTGGTAAAG CATAGCGATG ATTGTATATG
  CCTGTGAAAT CTATGTTCAA AACTCCACTT CATGCCAAGC CATCTCTATA TACCTGCGTG
  R
  CAAGTCTCTC TGCAGCCTCA GAAATTCTTT ACCAAATTGT ATGTGTTTTG TTTTAAACAG
  AGAAATGAAA GAGGTCTCAT TTCAGAGATC TGTTGCCAGG AGCCAGGAGA TTGAAGCTGA
  CAGCATCAAA GGGAAAACTG GCTGATGGCC CAAAGTGCAT GAAAGCACAC CATAGTTAAA
  CCTTATGGAG AAAATGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358616740	MGP_WTSI_3_80607801	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249834231					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358616740	MGP_WTSI_3_80607801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80711186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13281	CpG island 13281	711 bp distal
Gm66511	predicted gene, 66511	within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	Noncoding-Transcript-Variant
Rr578666	regulatory region 578666	554 bp distal
Rr578667	regulatory region 578667	1573 bp proximal
Rr578668	regulatory region 578668	1654 bp proximal
Tssr33765	transcription start site region 33765	1278 bp upstream
Tssr33766	transcription start site region 33766	1262 bp upstream
Tssr33767	transcription start site region 33767	1235 bp upstream
Tssr33768	transcription start site region 33768	1207 bp upstream
Tssr33769	transcription start site region 33769	1149 bp upstream
Tssr33770	transcription start site region 33770	1109 bp upstream
Tssr33771	transcription start site region 33771	1039 bp upstream