rs249842204 SNP Detail

Summary

• ID
  rs249842204
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4919842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGCAGA GAATATCCTC
  AGAATGACAG AATGATGGGA AACTCTAAGA TTACCCCAGG TCCTGGTGTG AGATCATTCA
  TGAGTGTGCA GCCACTGAGG CCCTCCTGAG GGATCTGTGC ACACTGCCTG GTGCTCCCAG
  CCAGTCTGCA ACTTAGTCTC TGTCTTTTCT CTAAGTCTTA TGGTTTCCTT GGGGTGGGGG
  T
  GGGGGTTGAA AGCTGTAGGG GGAGAAGCTG ATACTAAGTC TGGTTCCCTA ATTGGTTCTT
  GATTTGGTCA ATAAAGAAGG TGGGAGCCAA TTGCTGGGTG AAGGGTAAAG GTAGGACTTC
  CAGGTCCCAA GAGGAAGAGG AGACCCGAGG AAAGAGAAAG GGCTTTTTTG ACCAGGCTTT
  AGAACAAGGA GCACCCACCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401645010	MGP_WTSI_19_4869814	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249842204					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401645010	MGP_WTSI_19_4869814	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4919842 () rs orientation: forward

Symbol	Name	Function Class
Actn3	actinin alpha 3	within coordinates
Cpgi10415	CpG island 10415	1785 bp distal
Tssr154367	transcription start site region 154367	418 bp downstream
Tssr154368	transcription start site region 154368	400 bp downstream
Tssr154369	transcription start site region 154369	1262 bp upstream
Tssr157520	transcription start site region 157520	1816 bp upstream
Tssr157521	transcription start site region 157521	1779 bp upstream
Tssr157522	transcription start site region 157522	365 bp upstream