rs249860251 SNP Detail

Summary

• ID
  rs249860251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21901074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCAGAA GTGCGGGTCA
  ATCTGTCACT CAGACATATG GGTGCAGGGG ACACGACAAC AGGTCTGTGT CCCTGGGAGG
  GAAGTGCTTT ATACTAGGTT GGGGTTGATC AATCCCAGGT GTCGAGGGTG TCTCCTATGT
  CTGGAGGAGA AGGAGGGCAC ACTGAATCTG TACCATAGGT GATGGAAGCC ATGCCATCTC
  R
  GGCTAGAAGC CGCGAAGTGT CTGTGGCCCT GCATTTTGTG GGGGCAGCCT TTTGGGGGCG
  GTGCAGGGTC AAAAAGAGGT GAATACCCAG GGGGTTGTTC AGTGACCTTT ATTGCGCGAT
  TCCGAGGCGG GCACCAACCC GCCTCGAGAG ATTTACTGTG GGAACTTCTG GCTCGGCCTT
  TTCTCTCCTC CGGGCGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376878301	MGP_WTSI_9_21794222	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249860251					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376878301	MGP_WTSI_9_21794222	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21901074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21467	CpG island 21467	1456 bp distal
Cpgi21468	CpG island 21468	228 bp distal
Cpgi21469	CpG island 21469	104 bp proximal
Cpgi21470	CpG island 21470	1889 bp proximal
Gm36414	predicted gene, 36414	within coordinates
Odad3	outer dynein arm docking complex subunit 3	93 bp downstream
Rgl3	ral guanine nucleotide dissociation stimulator-like 3	309 bp upstream
Rr206074	regulatory region 206074	within coordinates
Tssr88431	transcription start site region 88431	354 bp upstream
Tssr88432	transcription start site region 88432	322 bp upstream