rs249864559 SNP Detail

Summary

• ID
  rs249864559
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:41163828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCATAT CAGGCTCCTG
  TCAGCAAGCA CTTATTGGCA TCCACAATAG TGTTTGGGTT TGGTGATTGT ATGTGGAATG
  GATCAAATGG CTCAGTGGTT AAGAGTACTG ACTGCTCTTC CAGAGGTCAT GAGTTCAGTT
  CCCAGCAACC ACATGGTGGC TCACAACCCC CTGTAATGGG AATCTGATGC CCTCTTCTGG
  K
  GCCTCTGAGG AGAGATACAG TGTACTCACA TCTGCATTTG TATTAGTCAG GTTCTTGCAA
  AACCTTTCAG GGGACTGCTA TAGGAAGCAG GGAGGGAGAG GTGATGGGGG TGTTGTGGAG
  GGGAAACTGG GAAGGGGGAT AACATTTGAA ATGTAAATAA ATAAAATTAC CAATAAAAAA
  AACTTGCCCA ATATGGTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368064077	MGP_WTSI_6_41136893	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	T	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249864559					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	T	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368064077	MGP_WTSI_6_41136893	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41163828 () rs orientation: forward

Symbol	Name	Function Class
Rr135325	regulatory region 135325	1173 bp proximal
Tcrb	T cell receptor beta chain	within coordinates
Trbv20	T cell receptor beta, variable 20	1379 bp upstream
Tssr55855	transcription start site region 55855	498 bp upstream
Tssr55856	transcription start site region 55856	1304 bp upstream
Tssr55857	transcription start site region 55857	1322 bp upstream
Tssr55858	transcription start site region 55858	1418 bp upstream
Tssr55859	transcription start site region 55859	1501 bp upstream