rs249872356 SNP Detail

Summary

• ID
  rs249872356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64697929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGTGT TTGTTAAAGC
  AATTGCTTAA TGGACAATAT ACAGTCTATT ATTTTAAAGA AAGTATAGTG GTGATAAGAA
  TATTGCCTTG AGGAGAGATG GCTCAGCGGG TAAGGGCACT GACTGCTCTT CCAAAGGTCC
  TGAGTTCAAA TCCCAGCAAC CACATGGTGG CTCACAAACA TCCGTAATGA GATCTGACTC
  Y
  CTCTTCTGGG GTGTCTGAAG ACAACTACAG TGTACTTACA TATAATAAGT AAATAAATCT
  TTGAAAAAAA AAAAGAATAT TGCCTTGAGT AGTGTGGGGA AAACATGAAC TAAGGAGGCC
  GGCTGGAGCT CGGTGCCTAT TCTCGGACTC TCTCCTGCTG TGGACTTGGG TAATCTGTAA
  CTACTCTGGA ACCCAGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377851612	MGP_WTSI_9_64638454	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	C	C	C	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	T	T	C	C	T	C	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249872356					SNP	C	C	C	T	C	C	C	C	C	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	T	T	C	C	T	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377851612	MGP_WTSI_9_64638454	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64697929 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	915 bp downstream
Rr681316	regulatory region 681316	793 bp distal
Rr681317	regulatory region 681317	48 bp proximal
Rr681318	regulatory region 681318	617 bp proximal
Rr681319	regulatory region 681319	1420 bp proximal
Tssr2909	transcription start site region 2909	147 bp downstream
Tssr85622	transcription start site region 85622	990 bp downstream
Tssr85623	transcription start site region 85623	970 bp downstream
Tssr85624	transcription start site region 85624	309 bp upstream
Tssr90157	transcription start site region 90157	175 bp downstream