rs249879185 SNP Detail

Summary

• ID
  rs249879185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86588938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGATGT GGCGGCTCTG
  GTCTGTAATC CCCAGCCAGC ACTAGGGAAA TTGCGGCAGG AGGATTGTTG TGAGTTCTAG
  GCCAGAAAAA ATACCGTTCT CAAAGAGAGA CAACTTATCA AAAGCTTCTA ATTAAAAGGT
  TGATCTGAAT TTCCACAAGC AAAGCTTGAG CCTCTCTTCT GTGTTTTCTT TAGTAAAACA
  R
  TTCCAAATTG CTCCTTAGTG ATATCAGCCA ACAACTAAGG AAGATGGCCA ACTTTATCGT
  GACTTATGCA ATATTTTTAA GTGGTCTGAA TCATTTTTTA ATCCTTGTCG AGAGGGCAGG
  GACGTGAACT GGGTTATTTG ATCTTGAAAG TTGTACAGCC ATCTGGAGTC ATAAGGGTTC
  AGGGAATTTC TTTCCTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362287732	MGP_WTSI_4_86316605	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249879185					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362287732	MGP_WTSI_4_86316605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86588938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	527 bp distal
Plin2	perilipin 2	641 bp upstream
Rr376780	regulatory region 376780	671 bp upstream
Rr594783	regulatory region 594783	1781 bp distal
Rr594784	regulatory region 594784	652 bp distal
Rr594785	regulatory region 594785	151 bp distal
Rr594786	regulatory region 594786	264 bp proximal
Rr594787	regulatory region 594787	1120 bp proximal
Rr594788	regulatory region 594788	1876 bp proximal
Tssr1221	transcription start site region 1221	448 bp downstream
Tssr37738	transcription start site region 37738	497 bp downstream
Tssr42336	transcription start site region 42336	1958 bp upstream
Tssr42337	transcription start site region 42337	1240 bp upstream
Tssr42338	transcription start site region 42338	1216 bp upstream
Tssr42339	transcription start site region 42339	1194 bp upstream
Tssr42340	transcription start site region 42340	676 bp upstream
Tssr42341	transcription start site region 42341	658 bp upstream
Tssr42342	transcription start site region 42342	1698 bp downstream
Tssr42343	transcription start site region 42343	1857 bp downstream