rs249880711 SNP Detail

Summary

• ID
  rs249880711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAACAAAA TGTTTTCTAA
  GATAGGGTCT CTCCTATCTC ACCCTAGTCT CTAACTCACT AAGTAGCTGA TACTTTGAAG
  TTCTTATGAT GCTCTTAAAA GCACCTTTTG AGTGCTGGAA TCCCAGGCAC GTGTATACCA
  CCCTATCAGG TTTGTGTGGC GCTGCCAATT GAACCAAGAG ACTTGTGCAT TCAAGCCAAG
  Y
  GCTCTACCCA TTGAACTACA TCCCCAGACC AATAAAACTC TGCAAACCAA AAACACACTT
  ATTATGTCCA GAAACCAAAG AAAGCAGGGT AAAAAAATAA AAATTTCAGC CACCTACTTT
  TTTCTCCTCT TTATCTCCCA CATTCAATCT GTAGCCATTC CCTCAATTTC ATATTAGAGA
  TGAATATCCA AGTCAGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381314810	MGP_WTSI_10_93496961	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249880711					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381314810	MGP_WTSI_10_93496961	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870078 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	1090 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1785 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	1499 bp upstream
Tssr95293	transcription start site region 95293	1233 bp upstream
Tssr95294	transcription start site region 95294	1828 bp upstream
Tssr95295	transcription start site region 95295	1841 bp upstream
Tssr98985	transcription start site region 98985	1512 bp downstream
Tssr98986	transcription start site region 98986	1555 bp downstream
Tssr98987	transcription start site region 98987	1573 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates