rs249887440 SNP Detail

Summary

• ID
  rs249887440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45859461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCAAGTG TTTTAACCAA
  GTTAACAGCA GAGGCCCTAG ATTTCTGGGC ATAGTTAAGA AGAACAGGAA ACAACACAGA
  GCAGGTACCT GCAAGGCAGT AAGAGGACAG CCTTTCAGGA GCTGTGCCTT TGGAAGCCGA
  GTGTATAGGT GCACCTGTGT GCCCGCCTGG TCATGTGCTT GTCCCAATGT GAGTACAACC
  R
  AAAGGGGCTA CCCACACGTC CATCCCCACT CTCCTCCTGC CTCCGTGCAA TATGCACGGT
  GTGCACCAGT GTGGATGCAA GGCTGGAACT TAGAGTTTCT ACTTCCCTTA GTTTCTTTGT
  CTCCTGGTTT CAAAAGACTA AAAGTAGGAC CCTAGCAAGG TACCGCACAG TACTGACTCA
  GAAATTCTTA AGCTTAGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403379	CHEV_17_45685484	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249887440					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45859461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9191	CpG island 9191	1429 bp distal
Cpgi9192	CpG island 9192	20 bp proximal
Tmem151b	transmembrane protein 151B	within coordinates
Tssr148206	transcription start site region 148206	1011 bp downstream
Tssr148207	transcription start site region 148207	1120 bp downstream
Tssr148208	transcription start site region 148208	1152 bp downstream