rs249888545 SNP Detail

Summary

• ID
  rs249888545
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147214725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTCATC TCCTGGCTCC
  TGGGTGTTTA TTTTTCTCCA CTTGTCATTT CTGCCTGAGA AGCCTTCGCC TCACATGTTT
  TAAAAACAGG TCCTCACTTT TGAAGTGTGT GATCAGGATG GAAAAAGATG TCTGGATATT
  TGGCTGTACA GTCATAACTG TGCTTAGTAA AGTGAACTGA GAGGTGGGGG TATCGCCTGG
  G
  GGACTTTGGT CGGGACTGTC TGTATATCTA TCTCTTTAAA TATTGCACTA ACCTGGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTACTGT TACTTCAAAG
  TTGCCTGGAG CTGGCAAATC AGAGTTCCCC CTCAACGAAT TGGAATTGAT GCGTTAGAGA
  GTGGCTTTTT GTGAGAGGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320549983	CHEV_2_147198541	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249888545					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147214725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	442 bp proximal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	1043 bp upstream
Tssr20632	transcription start site region 20632	1104 bp upstream
Tssr20633	transcription start site region 20633	1142 bp upstream
Tssr20634	transcription start site region 20634	1230 bp upstream