rs249888552 SNP Detail

Summary

• ID
  rs249888552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20793418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGACTG AGTAACTCAA
  AAGTACGCTA AGAGCTCAGT GAGAAGGCTG CATGAAGGAC TATATGCATG GGAGTACAGC
  TATGTGACTG CATTAGAAAC TGAGGCACAC AGAGGCTGGG AAGTCTTCCC TAATTGCTCC
  TCCTCCTCTT TTCTTTCTCT CCTCTTCTCT AAGCTAGGAG ATGGCACTGG CAAGGCAGGC
  R
  CCTTTGATCC AGGGGTGAAG CTCCAGTTCA ATGTAACCAA TTCCCTTCTC ATCCTTCAGC
  ATCATGAGCC CCTCCTAGAA ACACAATGTC CTTCAACTCA CGGGTACTTG GGGAGCAAAG
  GTGTGCAGAG GCGCTGGCGG ACACGGGTGG CGTTGGGACT ACATGGTGGT GTGCACAGAC
  TCCAGGTACT CCACTGTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403205886	MGP_WTSI_X_20504305	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249888552					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403205886	MGP_WTSI_X_20504305	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20793418 () rs orientation: forward

Symbol	Name	Function Class
Cfp	complement factor properdin	within coordinates
Gm61816	predicted gene, 61816	within coordinates
Tssr160693	transcription start site region 160693	1639 bp downstream
Tssr160694	transcription start site region 160694	1446 bp downstream
Tssr160695	transcription start site region 160695	1464 bp upstream
Tssr163090	transcription start site region 163090	506 bp downstream
Tssr163091	transcription start site region 163091	878 bp downstream
Tssr163092	transcription start site region 163092	919 bp downstream
Tssr163093	transcription start site region 163093	1203 bp downstream
Tssr163094	transcription start site region 163094	1325 bp downstream
Tssr163095	transcription start site region 163095	1593 bp downstream