rs249889494 SNP Detail

Summary

• ID
  rs249889494
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40761234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTAAATT TAATTGGTAA
  ACTTTCATTT TTCTAATTGT TGGGAGCCGC ATAACACAAG TACAGATGCA GTCCCATTTG
  GAACTCACAG GAACAGTTTA TCTTTGATCT AAGTTTCTGT TAGGGAAAGT ATTTTTATTT
  ATTTTGAATA TTTGAATAAC GTACTTATAT ATAAAATTTT CCGTTTTAAT AAGAAAAGTT
  W
  TGTATTTGTA GAATATTTGA ACATCCGATT TACTAATCAT ATCTTTCATT TGAATGAGAG
  GGAGGATTTA ATATGGGAGG AGAAAAACTC CCTAACTTGG ATTTTAATTT TCACTTAGTT
  CTTTTTAAAG TATATTTTAT TGCCAGTTAC AGTTTTTTTC TTTTAACTCT TATCGACATG
  GATATGAGTA GATCCAGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380132643	MGP_WTSI_10_40605044	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249889494					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380132643	MGP_WTSI_10_40605044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40761234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1464	CpG island 1464	508 bp distal
Rr401845	regulatory region 401845	1699 bp downstream
Rr430264	regulatory region 430264	1401 bp distal
Rr430265	regulatory region 430265	1461 bp distal
Rr430266	regulatory region 430266	93 bp distal
Rr430267	regulatory region 430267	481 bp distal
Tssr93031	transcription start site region 93031	1755 bp downstream
Tssr93032	transcription start site region 93032	1730 bp downstream
Tssr93033	transcription start site region 93033	1640 bp downstream
Tssr93034	transcription start site region 93034	1604 bp downstream
Tssr93035	transcription start site region 93035	1376 bp downstream
Wasf1	WASP family, member 1	within coordinates