rs249894347 SNP Detail

Summary

• ID
  rs249894347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24304524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAT ATATATATGA CGTCTAAAAC
  Y
  TCCAAAAGGA TTTTCTCACT GTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321493897	CHEV_5_23605344	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249894347					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24304524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	839 bp proximal
Gm71592	predicted gene, 71592	within coordinates
Klhl7	kelch-like 7	1079 bp upstream
Rr398996	regulatory region 398996	905 bp upstream
Rr608239	regulatory region 608239	395 bp proximal
Rr608240	regulatory region 608240	955 bp proximal
Rr608241	regulatory region 608241	1108 bp proximal
Tssr45399	transcription start site region 45399	1052 bp upstream
Tssr45400	transcription start site region 45400	1169 bp upstream
Tssr50303	transcription start site region 50303	941 bp downstream