rs249911725 SNP Detail

Summary

• ID
  rs249911725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73071068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CTGCAAATAA AAACAGAACT
  Y
  CCTCCTCCAG AATCCTTAAC GTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322708318	CHEV_8_74841123	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249911725					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73071068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	1374 bp proximal
Gm63983	predicted gene, 63983	within coordinates
Klf2	Kruppel-like transcription factor 2 (lung)	1838 bp upstream
Rr382265	regulatory region 382265	within coordinates
Rr400967	regulatory region 400967	1602 bp upstream
Rr665299	regulatory region 665299	532 bp distal
Rr665300	regulatory region 665300	304 bp proximal
Rr665301	regulatory region 665301	625 bp proximal
Rr665302	regulatory region 665302	1319 bp proximal
Tssr2606	transcription start site region 2606	1676 bp downstream
Tssr77968	transcription start site region 77968	1657 bp upstream
Tssr77969	transcription start site region 77969	1669 bp upstream
Tssr77970	transcription start site region 77970	1829 bp upstream