rs249914727 SNP Detail

Summary

• ID
  rs249914727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96243918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAAACGG AGGCTGCGTT
  GAGACCTCTC TGATAACATA GGGGTGCTTC CCTCGCAGAT GGCCCCGGAT TGCCAGAATG
  CGGCGGCAGC GGCTCCCGCA GACTGCGCAC GGCCTACACC AACACGCAAC TGCTGGAGCT
  GGAGAAGGAG TTCCACTTCA ATAAGTACCT GTGCCGGCCG CGTCGCGTCG AGATCGCTGC
  Y
  TTGCTGGACC TCACCGAAAG GCAGGTCAAA GTCTGGTTCC AGAACCGACG CATGAAACAC
  AAGCGGCAGA CGCAGCATCG AGAGCCGCCC GAGGGAGAAC CAGGCGGGCC GAGCGCCCAG
  GACGACGCGG GAGAGCCAGC CGAGGAACCC ACGGTCAGCC CGGGCGACGT CGCGACTCAC
  CGGCTGCGGG AAGCCTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384367057	MGP_WTSI_11_96214406	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249914727					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384367057	MGP_WTSI_11_96214406	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96243918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	916 bp distal
Cpgi3657	CpG island 3657	within coordinates
Cpgi3658	CpG island 3658	1372 bp proximal
Hoxb2	homeobox B2	within coordinates
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr386516	regulatory region 386516	1310 bp upstream
Rr455385	regulatory region 455385	1451 bp distal
Rr455386	regulatory region 455386	1589 bp proximal
Tssr104519	transcription start site region 104519	1457 bp downstream
Tssr104520	transcription start site region 104520	1218 bp downstream
Tssr104521	transcription start site region 104521	1184 bp downstream
Tssr104522	transcription start site region 104522	1124 bp downstream
Tssr104523	transcription start site region 104523	1074 bp downstream
Tssr104524	transcription start site region 104524	1022 bp downstream
Tssr104525	transcription start site region 104525	954 bp downstream
Tssr104526	transcription start site region 104526	211 bp downstream
Tssr104527	transcription start site region 104527	192 bp downstream
Tssr104528	transcription start site region 104528	6 bp downstream
Tssr104529	transcription start site region 104529	35 bp upstream
Tssr104530	transcription start site region 104530	63 bp upstream
Tssr104531	transcription start site region 104531	232 bp upstream