rs249914859 SNP Detail

Summary

• ID
  rs249914859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACAGAA TCCCTTCCTA
  AGAAGGCTCC AAGGGAAATG GATGGCCAGG CAAAGCAACA AGGAACCCCA AAAGGGCCCC
  ACAGAGGCTC AGAACACTAG TGCTGTAAAC CAGGATGAGA GTGTCTGGCA ATAGGACTGG
  CTTTGAGACC GCTGGTTTCT TGTGCTAGCC GAGTTTCCAG GTGGGGTCCA GAGGGTGCAG
  K
  ACGGGAGCCT CTTCCACTCC CTAGAGCCAG GATTCCTTCA GGAGCCAGGA AGATTGGAGT
  TATTGGGTGG GTGCTAATAA AAAGCCTGGA GCTGAACCCG ATCTCGGTAA ACAATTCCCT
  TTGATCTTTC CCTCCGGTGC ACCCACACAG TGTGCTGAAA GGGTCAAGGC TGCAGCTACT
  CTACCTGACA GTTGGATACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451238	MGP_WTSI_9_46038896	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T	G	G	T	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249914859					SNP	T	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T	G	G	T	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451238	MGP_WTSI_9_46038896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142111 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	344 bp downstream
Cpgi21701	CpG island 21701	308 bp distal
Rr195182	regulatory region 195182	1911 bp distal
Rr195183	regulatory region 195183	1111 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84841	transcription start site region 84841	1969 bp downstream
Tssr84842	transcription start site region 84842	1867 bp downstream
Tssr84843	transcription start site region 84843	1833 bp downstream
Tssr84844	transcription start site region 84844	1659 bp downstream
Tssr84845	transcription start site region 84845	1622 bp downstream
Tssr84846	transcription start site region 84846	1567 bp downstream
Tssr84847	transcription start site region 84847	905 bp downstream
Tssr84848	transcription start site region 84848	827 bp downstream
Tssr84849	transcription start site region 84849	791 bp downstream
Tssr84850	transcription start site region 84850	749 bp downstream
Tssr84851	transcription start site region 84851	714 bp downstream
Tssr84852	transcription start site region 84852	617 bp downstream
Tssr84853	transcription start site region 84853	583 bp downstream
Tssr84854	transcription start site region 84854	570 bp downstream
Tssr84855	transcription start site region 84855	550 bp downstream
Tssr84856	transcription start site region 84856	539 bp downstream
Tssr84857	transcription start site region 84857	417 bp downstream
Tssr84858	transcription start site region 84858	380 bp downstream
Tssr89313	transcription start site region 89313	838 bp upstream
Tssr89314	transcription start site region 89314	810 bp upstream
Tssr89315	transcription start site region 89315	787 bp upstream
Tssr89316	transcription start site region 89316	767 bp upstream
Tssr89317	transcription start site region 89317	758 bp upstream
Tssr89318	transcription start site region 89318	734 bp upstream
Tssr89319	transcription start site region 89319	724 bp upstream
Tssr89320	transcription start site region 89320	711 bp upstream
Tssr89321	transcription start site region 89321	686 bp upstream
Tssr89322	transcription start site region 89322	603 bp upstream
Tssr89323	transcription start site region 89323	551 bp upstream
Tssr89324	transcription start site region 89324	523 bp upstream
Tssr89325	transcription start site region 89325	498 bp upstream
Tssr89326	transcription start site region 89326	464 bp upstream
Tssr89327	transcription start site region 89327	350 bp upstream