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rs249916412 SNP Detail
Summary
  • ID
    rs249916412
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:57531569 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGCACCTTC CGGGTCAGCA
CTGCATCCCC CACACCATCC TCAATCTGCA GAGGATAGGA GAGCATGAGG GAGGGGAAAA
GGTCCCCAAG ATAAAGGAGG CTAAGAAGGG GAGGAGCTCA GAATGGGTGG CCTGGTTCAG
CAAGGTGAGT GACTGGTAGG GGCACTAAGA GGTGGGATGG GCTCTGGAGT GATGATGGGG
Y
GTGGTCGGGG GGCGGGGGAG GGAGCAGGGA GAGGCTGCCA TTCTAAGCTC TCATTCCAAG
GGGTGAGAAA GTACCACTAC GCGCGTGAGG GAGTGGGCCA GAGAAATCTT CTTATCGCCA
TCCTGGACCC CAAAAATCAC GAAGGCTGTC CCGTCCACGT TTTTCCCGTA CAGGAACCTG
AGAGACAAGG AGACTTGGGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398573196 MGP_WTSI_17_57363992 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C T C C C T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249916412 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C T C C C T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398573196 MGP_WTSI_17_57363992 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:57531569 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
C3 complement component 3 within coordinates
Cpgi9399 CpG island 9399 within coordinates
Tssr145378 transcription start site region 145378 1434 bp downstream
Tssr145379 transcription start site region 145379 1359 bp downstream
Tssr145380 transcription start site region 145380 1314 bp downstream
Tssr145381 transcription start site region 145381 1260 bp downstream
Tssr145382 transcription start site region 145382 706 bp downstream
Tssr145383 transcription start site region 145383 629 bp downstream
Tssr145384 transcription start site region 145384 459 bp downstream
Tssr145385 transcription start site region 145385 680 bp upstream
Tssr145386 transcription start site region 145386 1456 bp upstream
Tssr145387 transcription start site region 145387 1687 bp upstream
Tssr148942 transcription start site region 148942 1723 bp upstream
Tssr148943 transcription start site region 148943 1683 bp upstream
Tssr148944 transcription start site region 148944 1669 bp upstream
Tssr148945 transcription start site region 148945 1632 bp upstream
Tssr148946 transcription start site region 148946 1620 bp upstream
Tssr148947 transcription start site region 148947 1370 bp upstream
Tssr148948 transcription start site region 148948 1286 bp upstream
Tssr148949 transcription start site region 148949 1230 bp upstream
Tssr148950 transcription start site region 148950 676 bp upstream
Tssr148951 transcription start site region 148951 647 bp upstream
Tssr148952 transcription start site region 148952 587 bp upstream
Tssr148953 transcription start site region 148953 406 bp upstream
Tssr148954 transcription start site region 148954 381 bp upstream
Tssr148955 transcription start site region 148955 236 bp upstream
Tssr148956 transcription start site region 148956 203 bp upstream
Tssr148957 transcription start site region 148957 311 bp downstream
Tssr148958 transcription start site region 148958 534 bp downstream
Tssr148959 transcription start site region 148959 694 bp downstream
Tssr148960 transcription start site region 148960 1448 bp downstream
Tssr148961 transcription start site region 148961 1485 bp downstream
Tssr148962 transcription start site region 148962 1631 bp downstream
Tssr148963 transcription start site region 148963 1683 bp downstream
Tssr148964 transcription start site region 148964 1716 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory