rs249918095 SNP Detail

Summary

• ID
  rs249918095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55067405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAGATACG GTAGAATACT TCTCTTAACA
  GGCAGCTCAA GGGAATAGTA TAGGGTCACA AGCAATGTTA AGTCCTGATC TACAATAAAG
  CCCAGTTCTT TTCTTGAGAG AAACATAATT CTGCCAAATG GGTAAGATGA CCCCAGGTAA
  Y
  AACTATTTGA AAAAGTACAA CACTGGTGCA CTTAAAATAA TTCTGGCAAT AACTGATGCC
  TAAATGACCA GGCAAATAGG AGTGACCTAT TGACCAGATT TTCAGCCTTC TGTCTCTGTT
  TAAGTTGTAC TAAATGTAAC CCAGGGTTGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319727220	CHEV_1_55085090	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249918095					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55067405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	501 bp distal
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Sf3b1	splicing factor 3b, subunit 1	765 bp upstream
Tssr6707	transcription start site region 6707	1870 bp downstream
Tssr6708	transcription start site region 6708	646 bp downstream
Tssr11708	transcription start site region 11708	840 bp upstream
Tssr11709	transcription start site region 11709	762 bp upstream