rs249919380 SNP Detail

Summary

• ID
  rs249919380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:115632220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTCTGT GGCTCAGACT
  CCCCTGGCAA TCTAAACTGT TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCCCTC
  TCCCCCCTCT CCCCCCTCTC CCCTCTCCCC TCTTCCCCCT CTCCCCTCTC TCCCCTCTCT
  CCCTCTCCCC ATCCTTTCCT CCTCCACCTT TCTCTTGTTT CTTCTTTTTT ATGACTTTAC
  Y
  TTTTGATATT ATGAATAACA TAAAATATCA CTTTGAAAGT TTCGCTAAAA CTTTCTCAAA
  ACCCAAGCAA GCATGCCGCG ATGAAAGATC CAGTGTTCAC AAAGCCCTCA AGATGTTGCC
  CTCTTGTGGG TACAAAGGGC ATTGCCATCC AAGAGCCCCA TCTGAACCCT AAGCTGGAGA
  ATAGAAAGAG CGAGGGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372831569	MGP_WTSI_7_123176499	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249919380					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372831569	MGP_WTSI_7_123176499	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:115632220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19603	CpG island 19603	461 bp distal
Cpgi19604	CpG island 19604	479 bp proximal
Rr654127	regulatory region 654127	1949 bp distal
Rr654128	regulatory region 654128	1153 bp distal
Rr654129	regulatory region 654129	113 bp proximal
Sox6	SRY (sex determining region Y)-box 6	within coordinates
Sox6os	SRY (sex determining region Y)-box 6, opposite strand	435 bp downstream
Tssr68686	transcription start site region 68686	1053 bp downstream
Tssr68687	transcription start site region 68687	976 bp downstream
Tssr74377	transcription start site region 74377	1985 bp upstream
Tssr74378	transcription start site region 74378	1863 bp upstream
Tssr74379	transcription start site region 74379	621 bp downstream
Tssr74380	transcription start site region 74380	826 bp downstream
Tssr74381	transcription start site region 74381	878 bp downstream
Tssr74382	transcription start site region 74382	1324 bp downstream
Tssr74383	transcription start site region 74383	1405 bp downstream
Tssr74384	transcription start site region 74384	1478 bp downstream
Tssr74385	transcription start site region 74385	1612 bp downstream