rs249923272 SNP Detail

Summary

• ID
  rs249923272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG ATGCTGGCCA ATGATCTTAG
  R
  GGCTGAGCTA ATATTAACCA ATCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974407	CHEV_1_133424361	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249923272					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	119 bp upstream
Gm70877	predicted gene, 70877	96 bp downstream
Rr396286	regulatory region 396286	201 bp downstream
Rr396287	regulatory region 396287	within coordinates
Rr418129	regulatory region 418129	1150 bp distal
Rr418130	regulatory region 418130	1535 bp distal
Rr418131	regulatory region 418131	448 bp distal
Rr418132	regulatory region 418132	within coordinates
Rr418133	regulatory region 418133	350 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	432 bp upstream
Tssr8629	transcription start site region 8629	74 bp upstream
Tssr8630	transcription start site region 8630	117 bp upstream
Tssr8631	transcription start site region 8631	196 bp upstream
Tssr8632	transcription start site region 8632	577 bp upstream
Tssr13597	transcription start site region 13597	1937 bp upstream
Tssr13598	transcription start site region 13598	1236 bp upstream
Tssr13599	transcription start site region 13599	1194 bp upstream
Tssr13600	transcription start site region 13600	1039 bp upstream
Tssr13601	transcription start site region 13601	491 bp upstream
Tssr13602	transcription start site region 13602	399 bp upstream
Tssr13603	transcription start site region 13603	244 bp upstream