rs249926227 SNP Detail

Summary

• ID
  rs249926227
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTATGTAA CCTTTGCAGG
  CCTCAAACTC TAGATCCTGC TGCCTCAATT TCCCAAGTGC CAGGTTGTGC TCAGTTTTTT
  TTTGTTGTTT TTTTTTTGTT GTTTTTGTTT TGTTTTTTTC GAGACAGGGT TTCTCTGTAT
  ATCAGTTTTT TATTATTATA GTTTGAGACA GGGTCTCAAG GATCGGCCTG CCTCAGCCCG
  C
  GGAGTGCTGG GATTAACAAC ATGACTTGTG CTCATTATTA TTATTATTGT TATTATTATT
  ATTATTATTA TTATTATTAT TATTATTATT ATTATTATTA TTATTTTCGA GACAGGGTTT
  CTCTGTGAAG TCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCGGGCTGGC CTCGAACTCA
  GAAATCTGCC TGCCTCTGCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382200152	MGP_WTSI_10_127649704	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249926227					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382200152	MGP_WTSI_10_127649704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	594 bp distal
Cpgi2388	CpG island 2388	431 bp proximal
Rr224447	regulatory region 224447	316 bp distal
Rr224448	regulatory region 224448	83 bp proximal
Rr402345	regulatory region 402345	637 bp downstream
Rr402346	regulatory region 402346	156 bp upstream
Spryd4	SPRY domain containing 4	854 bp upstream
Tssr99849	transcription start site region 99849	873 bp upstream
Tssr99850	transcription start site region 99850	825 bp upstream