rs249927203 SNP Detail

Summary

• ID
  rs249927203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172198328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    actcctgac agagcctgga ctcttggtca
  ccacctaatt ttccctctcc agttctcaag tggatcttct cagcaaagcC GGTTCTCTCT
  CAGCTTCTGT TTCTGTAGAA CTGGGGTTGA CTCGAGAAAC ACAAGCAGCC ACCTTTCCTG
  Y
  ACCCATCCTG GATTCTGAGA AATTCAATTT TGGAAATACT GTCTAATACT CTGGCCCTGT
  CCTTTGGGCA GCTCTGTCCT GAAAAGATAT GTTTTAGTGT TTCCTGGGAA TAGGAAGACC
  TTAACCAATG ctctctctct ctctctctct                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320124591	CHEV_1_174300892	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249927203					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172198328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	1305 bp distal
Cpgi1046	CpG island 1046	792 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	1772 bp distal
Tssr10190	transcription start site region 10190	276 bp downstream
Tssr10191	transcription start site region 10191	60 bp downstream
Tssr10192	transcription start site region 10192	103 bp upstream