rs249939663 SNP Detail

Summary

• ID
  rs249939663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAATCAA GCACGCACCA
  CCTGGGTTAG AAGCTAGCAT ATATGCTAGC TTCTAACAGA ATTTTGTCGC CTCTTGTGCT
  ATGCTTGGTG GAAGTTCATT TCATGGTTAT CGTAGTACCA AATGTTGTGG TCCGTGGCAT
  CTCCTCATGT CTACACAGCG CTGTTAGGAG CAGTGATCTC TTCCCAAGGC TATAGCTTCC
  R
  AGAATTACCT TTCTCTTCCC CCTCAACAAA AGAAAGAGAA ATGTTTCTGC TTGTGACACA
  CCAGAGATGA AATATAGCAG TGGCCTGCGG TAAAGGGAGC CACAGAGTCC AGGGACCTGC
  ACCATGTCAC CCCTCCACTC TTCCCTGTCC TTCCTCACAG GTTGTCCTTG TTCCCTAGGT
  GTCACTGAAC TGAGAGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356429551	MGP_WTSI_2_164159781	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249939663					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356429551	MGP_WTSI_2_164159781	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175965 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	711 bp downstream
Tssr745	transcription start site region 745	668 bp downstream
Tssr746	transcription start site region 746	661 bp downstream
Tssr747	transcription start site region 747	648 bp upstream
Tssr748	transcription start site region 748	623 bp downstream
Tssr749	transcription start site region 749	586 bp downstream
Tssr750	transcription start site region 750	569 bp downstream
Tssr751	transcription start site region 751	517 bp downstream
Tssr752	transcription start site region 752	455 bp downstream
Tssr753	transcription start site region 753	445 bp downstream
Tssr754	transcription start site region 754	219 bp upstream
Tssr21562	transcription start site region 21562	1309 bp downstream
Tssr21563	transcription start site region 21563	1300 bp downstream
Tssr21564	transcription start site region 21564	1269 bp downstream
Tssr21565	transcription start site region 21565	1256 bp downstream
Tssr21566	transcription start site region 21566	1245 bp downstream
Tssr21567	transcription start site region 21567	1233 bp downstream
Tssr21568	transcription start site region 21568	1224 bp downstream
Tssr21569	transcription start site region 21569	719 bp downstream
Tssr21570	transcription start site region 21570	677 bp downstream
Tssr21571	transcription start site region 21571	649 bp downstream
Tssr21572	transcription start site region 21572	635 bp downstream
Tssr21573	transcription start site region 21573	604 bp downstream
Tssr21574	transcription start site region 21574	542 bp downstream
Tssr21575	transcription start site region 21575	231 bp upstream
Tssr21576	transcription start site region 21576	247 bp upstream
Tssr21577	transcription start site region 21577	266 bp upstream
Tssr27433	transcription start site region 27433	689 bp upstream
Tssr27434	transcription start site region 27434	659 bp upstream
Tssr27435	transcription start site region 27435	634 bp upstream
Tssr27436	transcription start site region 27436	617 bp upstream
Tssr27437	transcription start site region 27437	576 bp upstream
Tssr27438	transcription start site region 27438	559 bp upstream
Tssr27439	transcription start site region 27439	554 bp upstream
Tssr27440	transcription start site region 27440	538 bp upstream
Tssr27441	transcription start site region 27441	489 bp upstream
Tssr27442	transcription start site region 27442	479 bp upstream
Tssr27443	transcription start site region 27443	420 bp upstream
Tssr27444	transcription start site region 27444	409 bp upstream
Tssr27445	transcription start site region 27445	204 bp downstream
Tssr27446	transcription start site region 27446	248 bp downstream
Tssr27447	transcription start site region 27447	343 bp downstream
Tssr27448	transcription start site region 27448	957 bp downstream