rs249940749 SNP Detail

Summary

• ID
  rs249940749
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51444717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGATCTA ACTTCTAATT
  CACGTAAACT TTCTTAGATT TTCTTCAAAA AAATTCAGAA AAACCATACC CAGCTCTTAG
  GTCATTTAAA GGGTATTAAA GAATTCTTTT GTAATTCATT AAATTCTACA ACCCAAGTCC
  AAAATTTACT ACTTTTTAGA TTTAAAAAAA ATTTAAAAAA CCTGTTTCCA AATTCACCAC
  K
  TCCAAGATTC AGTTTCTGAA AAGTGGCATA TTTGCTTTTC CCTGAGCTGC CCCCTCTGGT
  GTTAATTGTA AGTATCTCAA GATGAAAAAA AAAAATCCTG CAACTCTGAA ACAAGCTCCA
  TGAAGAATGC TGAAACTCCA GATATCACCT TAAATCTGGT TTTGTCAGGC ACTTAATACT
  GGCTTTCCAA TAGCTAAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292309	MGP_WTSI_6_51417736	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249940749					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292309	MGP_WTSI_6_51417736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51444717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17402	CpG island 17402	1108 bp proximal
Gm67572	predicted gene, 67572	1693 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	578 bp upstream
Rr630212	regulatory region 630212	within coordinates
Rr630213	regulatory region 630213	1203 bp proximal
Tssr56443	transcription start site region 56443	1691 bp upstream
Tssr60939	transcription start site region 60939	1512 bp upstream
Tssr60940	transcription start site region 60940	1333 bp upstream
Tssr60941	transcription start site region 60941	1049 bp upstream
Tssr60942	transcription start site region 60942	902 bp upstream
Tssr60943	transcription start site region 60943	792 bp upstream
Tssr60944	transcription start site region 60944	745 bp upstream
Tssr60945	transcription start site region 60945	82 bp downstream
Tssr60946	transcription start site region 60946	714 bp downstream