rs249949944 SNP Detail

Summary

• ID
  rs249949944
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141941791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGGCAG GATGACGCCG
  CAGTCCCGCG GAGTCAGCTG ACCCGCTTGT TTGGCCCTCA ACGGGTCACG TGAGACGCGG
  GCGAGGGGCG GGGCGACCCG AACCCGCCTC CAACACTGCC CGGGCGCAGG CGTGCCCTAC
  TCCAGGCCTA CGCACGGCTC TCGGGAACGC GCCCGCCCAC TTTCCTGGGA CCGGAGAATG
  M
  CTGGATACAG GTCACGTGGG GGAAGGAAGA CCAGGCAGGC CCGGAAGCAT CCAGAGGGGC
  GGATCCTGCC CTCAGCTCCG CCCCTCCCTT AATCTGTCTT TTTTGCATAA TTGGGGTGCC
  CACTACCAGG ATGTGGTCTT TGTCTGATTG GGCCCTGACC CTCTCCTGGA TGCCAGCTTA
  AACCTAAGCC TTTTCTCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373450136	MGP_WTSI_7_149573959	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249949944					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373450136	MGP_WTSI_7_149573959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141941791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	within coordinates
Ctsd	cathepsin D	227 bp upstream
Rr381604	regulatory region 381604	within coordinates
Rr658153	regulatory region 658153	208 bp distal
Rr658154	regulatory region 658154	201 bp distal
Rr658155	regulatory region 658155	within coordinates
Tssr70147	transcription start site region 70147	1043 bp downstream
Tssr70148	transcription start site region 70148	116 bp upstream
Tssr70149	transcription start site region 70149	172 bp upstream
Tssr75793	transcription start site region 75793	1371 bp upstream
Tssr75794	transcription start site region 75794	1206 bp upstream
Tssr75795	transcription start site region 75795	1175 bp upstream
Tssr75796	transcription start site region 75796	209 bp upstream
Tssr75797	transcription start site region 75797	169 bp upstream
Tssr75798	transcription start site region 75798	148 bp upstream
Tssr75799	transcription start site region 75799	119 bp upstream