rs249965368 SNP Detail

Summary

• ID
  rs249965368
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69332363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGAATTT AATGTTTATT
  GGTTTTTTTT TCTAGCTAAT CAGCACCCTT TTCATTTAAA AAGATACTTG CAGATGAGCA
  CAGTATATGA TGTGCTTTTA TTTTTCTTGC TTTTCTACAA ACATGTGCTA GTCCACTTTG
  CAAAAGCTCA GTATTCACCC TTGCAAAGTA CAATTTAATA TCAACGCATC AACATAGCTG
  W
  ACAATGATAA GCATAATGGA ATTTGGAATA TTTCTATCAT GCTCCTCACC CTGCCCCCAC
  ACTCCTAGCA CCCCATATCC CCTCGCCCTG GAACATCACT AATCTATGGA CTGTCTTTGT
  AGGTTTGGAA TGGTCATTTG GCATGGCCTC TCCCACTGAA AATCCAGGAT AGCTTAAAAT
  GTTTGACCAT GACTTTCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375074712	MGP_WTSI_8_71403610	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249965368					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375074712	MGP_WTSI_8_71403610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69332363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	702 bp proximal
D8Mit26	DNA segment, Chr 8, Massachusetts Institute of Technology 26	196 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	844 bp upstream
Rr664454	regulatory region 664454	873 bp distal
Rr664455	regulatory region 664455	300 bp proximal
Rr664456	regulatory region 664456	791 bp proximal
Rr664457	regulatory region 664457	1891 bp proximal
Tssr77601	transcription start site region 77601	837 bp upstream
Tssr77602	transcription start site region 77602	920 bp upstream
Tssr77603	transcription start site region 77603	939 bp upstream
Tssr77604	transcription start site region 77604	1003 bp upstream
Tssr77605	transcription start site region 77605	1012 bp upstream