rs249977219 SNP Detail

Summary

• ID
  rs249977219
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149984130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATGGCAT TGATATCTCT GAGTCATGAT
  CCTTAAACCA TTATCTTATG TCCTTTCATC TACAATAAGA GTgaaatgta ccttactggt
  agaacagttg cctaatgctt aggaggccct gggttctagc ttcaacactg aacaagaaaa
  W
  TCTAGGTTGT CCCTTAATGA AATGGTTCTG CTCTTGCTTA CATGGGTTCT AACAAGAGTC
  AGAACTTATT ACCTCAGTTG CTGAAGAACT GTTAAAATAT GTGCTATGTA CTACAGAGAC
  ATCAAAAGCA TGTTTAAAAA GAAAAAAGAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045559	CHEV_1_151955509	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249977219					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149984130 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	152 bp downstream
Tssr9287	transcription start site region 9287	1894 bp downstream
Tssr9288	transcription start site region 9288	1780 bp downstream
Tssr9289	transcription start site region 9289	1763 bp downstream
Tssr9290	transcription start site region 9290	1609 bp downstream
Tssr9291	transcription start site region 9291	1561 bp downstream
Tssr9292	transcription start site region 9292	1433 bp downstream
Tssr9293	transcription start site region 9293	1417 bp downstream
Tssr9294	transcription start site region 9294	1394 bp downstream
Tssr9295	transcription start site region 9295	1367 bp downstream
Tssr9296	transcription start site region 9296	1355 bp downstream
Tssr9297	transcription start site region 9297	1342 bp downstream
Tssr9298	transcription start site region 9298	1316 bp downstream
Tssr9299	transcription start site region 9299	1298 bp downstream
Tssr9300	transcription start site region 9300	1279 bp downstream
Tssr9301	transcription start site region 9301	1146 bp downstream
Tssr9302	transcription start site region 9302	1122 bp downstream
Tssr9303	transcription start site region 9303	1046 bp downstream
Tssr9304	transcription start site region 9304	1026 bp downstream
Tssr9305	transcription start site region 9305	1017 bp downstream
Tssr9306	transcription start site region 9306	1005 bp downstream
Tssr9307	transcription start site region 9307	979 bp downstream
Tssr9308	transcription start site region 9308	962 bp downstream
Tssr9309	transcription start site region 9309	940 bp downstream
Tssr9310	transcription start site region 9310	915 bp downstream
Tssr9311	transcription start site region 9311	892 bp downstream
Tssr9312	transcription start site region 9312	874 bp downstream
Tssr9313	transcription start site region 9313	866 bp downstream
Tssr9314	transcription start site region 9314	847 bp downstream
Tssr9315	transcription start site region 9315	755 bp downstream
Tssr9316	transcription start site region 9316	570 bp downstream
Tssr9317	transcription start site region 9317	284 bp downstream
Tssr9318	transcription start site region 9318	425 bp upstream