rs249978966 SNP Detail

Summary

• ID
  rs249978966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153061002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGATCCCTG GCAGTGGTGA CTGGAACACC
  ATGGAGAGCA GGAAGCAACA GTAACTATGA ATGTGAAAAG TTGGGTGATC AGAGGAAAGC
  GCTTCAGCTA AGAGACAGAG AAACCCCCGC ACTAGGTGTC ATCATAGTTG ACAGGACACA
  Y
  ACACACGAAA AACAGTCGCT AAGTTCTCGC AGATTTTGTT TATATGACCT TAACTCCTCA
  GGACATGACA GCCACCGGGT GCTCTCGGTA GGAGTAAATG TTACTTGAAG TTTGAGTCCA
  ATAAATACCT GGGAGGCGAA ACTGTTCTTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071226	CHEV_1_155032386	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249978966					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153061002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	514 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Tssr14250	transcription start site region 14250	755 bp downstream
Tssr14251	transcription start site region 14251	815 bp downstream
Tssr14252	transcription start site region 14252	846 bp downstream
Tssr14253	transcription start site region 14253	869 bp downstream
Tssr14254	transcription start site region 14254	886 bp downstream