rs249979845 SNP Detail

Summary

• ID
  rs249979845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4299191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCCACA CCTGCCAGTG
  CTGAGCAGAA TGAGTAGCTG GGTAGGGGCA GGTGGGTGAT CTCTAAACTG CAAAACTGTG
  CTGTTCTTGT GAGGTCACTG CCTGCACCTT GTGCCCTGGC TGTCTTCCTG TGCCCATAAA
  GGAAGTGGCT TGTTGCCCCC TCCCAGACAT GCTCCCTTTT CGCCCTCCTG TGGATTCTCC
  Y
  ATTAGCCATT TGGTCTCACT CTTAAGGCCA GTTGAAGATG GTCCCTTACG GTTTCTCAAA
  TTAGGTTAGT GATGTGAAAT GCTCCTGTCC CTACCTCCTT CCCGAGCCCC ATCCCTGCAG
  AAGGCAACTG CTGGGTTTCC AATTCTTTTC CAAGTTCATT TTGTTTATCC TGCTCCGCAA
  TCCCCTGAGC CAGAAGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324213507	CHEV_13_4248438	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249979845					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4299191 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	831 bp downstream
Gm61344	predicted gene, 61344	within coordinates
Marcksl1-ps4	MARCKS-like 1, pseudogene 4	167 bp downstream
Rr283540	regulatory region 283540	391 bp distal
Tssr118223	transcription start site region 118223	513 bp upstream